Escherichia flexneri
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers upec-273
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.67%
CheckM Contamination 0.6%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 18
Contig Count 203
N50 Contigs 55,703 bp
Longest Contig 296,190 bp
Scaffold Count 102
N50 Scaffolds 148,281 bp
Longest Scaffold 312,913 bp
Genome Size 4,927,547 bp
Protein Count 4,693
Coding Density 88.00%
GC Percentage 50.73%
Ambiguous Bases 62
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM77767v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02802100
Country USA: WA
Date 2014-11-13
Genbank Assembly Accession GCA_000777675.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source patient with urinary tract infection
Latitude Longitude None
Molecule Count N/A
CDS Count 5,085
Refseq Category na
Seq Rel Date 2014/11/13
Spanned Gaps 101
Species Taxid 562
SSU Count 1
Submitter University of Washington
Taxid 562
Total Gap Length 10016
Translation Table 11
tRNA Count (total) 48
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JSIU00000000.1