Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers upec-277
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003697165.2)
Genome Characteristics
CheckM Completeness 99.91%
CheckM Contamination 0.07%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 3
23S Count 3
tRNA Count 18
Contig Count 190
N50 Contigs 63,094 bp
Longest Contig 219,723 bp
Scaffold Count 132
N50 Scaffolds 110,608 bp
Longest Scaffold 237,713 bp
Genome Size 5,046,515 bp
Protein Count 4,715
Coding Density 87.97%
GC Percentage 50.45%
Ambiguous Bases 29
GTDB representative GCA_003697165.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM77760v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02802104
Country USA: WA
Date 2014-11-13
Genbank Assembly Accession GCA_000777605.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source patient with urinary tract infection
Latitude Longitude None
Molecule Count N/A
CDS Count 4,922
Refseq Category na
Seq Rel Date 2014/11/13
Spanned Gaps 58
Species Taxid 562
SSU Count 3
Submitter University of Washington
Taxid 562
Total Gap Length 5717
Translation Table 11
tRNA Count (total) 52
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JSIR00000000.1