Escherichia coli_D
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli_D
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers upec-286
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000026325.2)
Genome Characteristics
CheckM Completeness 99.61%
CheckM Contamination 0.04%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 2
tRNA Count 18
Contig Count 263
N50 Contigs 74,271 bp
Longest Contig 257,192 bp
Scaffold Count 155
N50 Scaffolds 102,947 bp
Longest Scaffold 279,260 bp
Genome Size 5,336,914 bp
Protein Count 5,112
Coding Density 87.56%
GC Percentage 50.47%
Ambiguous Bases 59
GTDB representative GCA_000026325.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM77747v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02802114
Country USA: WA
Date 2014-11-13
Genbank Assembly Accession GCA_000777475.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source patient with urinary tract infection
Latitude Longitude None
Molecule Count N/A
CDS Count 5,573
Refseq Category na
Seq Rel Date 2014/11/13
Spanned Gaps 108
Species Taxid 562
SSU Count 1
Submitter University of Washington
Taxid 562
Total Gap Length 10800
Translation Table 11
tRNA Count (total) 58
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JSIK00000000.1