Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers upec-55
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003697165.2)
Genome Characteristics
CheckM Completeness 88.13%
CheckM Contamination 1.17%
CheckM Strain Heterogeneity 75.0
5S Count 6
16S Count 5
23S Count 8
tRNA Count 18
Contig Count 389
N50 Contigs 29,265 bp
Longest Contig 106,719 bp
Scaffold Count 185
N50 Scaffolds 76,833 bp
Longest Scaffold 172,456 bp
Genome Size 4,690,630 bp
Protein Count 4,595
Coding Density 86.45%
GC Percentage 50.69%
Ambiguous Bases 352
GTDB representative GCA_003697165.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM77691v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02802147
Country USA: WA
Date 2014-11-13
Genbank Assembly Accession GCA_000776915.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source patient with urinary tract infection
Latitude Longitude None
Molecule Count N/A
CDS Count 4,741
Refseq Category na
Seq Rel Date 2014/11/13
Spanned Gaps 204
Species Taxid 562
SSU Count 5
Submitter University of Washington
Taxid 562
Total Gap Length 20319
Translation Table 11
tRNA Count (total) 47
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JSHI00000000.1