Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers upec-88
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_003697165.2)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.37%
CheckM Strain Heterogeneity 0.0
5S Count 6
16S Count 6
23S Count 7
tRNA Count 20
Contig Count 233
N50 Contigs 111,121 bp
Longest Contig 323,591 bp
Scaffold Count 128
N50 Scaffolds 191,455 bp
Longest Scaffold 422,013 bp
Genome Size 5,204,349 bp
Protein Count 4,929
Coding Density 87.33%
GC Percentage 50.70%
Ambiguous Bases 124
GTDB representative GCA_003697165.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM77653v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02802183
Country USA: WA
Date 2014-11-13
Genbank Assembly Accession GCA_000776535.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source patient with urinary tract infection
Latitude Longitude None
Molecule Count N/A
CDS Count 5,368
Refseq Category na
Seq Rel Date 2014/11/13
Spanned Gaps 105
Species Taxid 562
SSU Count 6
Submitter University of Washington
Taxid 562
Total Gap Length 10500
Translation Table 11
tRNA Count (total) 66
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JSGB00000000.1