Dickeya fangzhongdai
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Dickeya; s__Dickeya fangzhongdai
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Pectobacteriaceae; g__Dickeya; s__Dickeya fangzhongdai
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Pectobacteriaceae; g__Dickeya; s__Dickeya fangzhongdai
NCBI Strain Identifiers M074
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002812485.1)
Genome Characteristics
CheckM Completeness 99.53%
CheckM Contamination 1.07%
CheckM Strain Heterogeneity 0.0
5S Count 4
16S Count 1
23S Count 1
tRNA Count 18
Contig Count 145
N50 Contigs 82,809 bp
Longest Contig 253,194 bp
Scaffold Count 145
N50 Scaffolds 82,809 bp
Longest Scaffold 253,194 bp
Genome Size 4,952,363 bp
Protein Count 4,365
Coding Density 86.42%
GC Percentage 56.81%
Ambiguous Bases N/A
GTDB representative GCA_002812485.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM77406v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03113152
Country Malaysia
Date 2014-11-10
Genbank Assembly Accession GCA_000774065.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source waterfall
Latitude Longitude None
Molecule Count N/A
CDS Count 4,432
Refseq Category na
Seq Rel Date 2014/11/10
Spanned Gaps 0
Species Taxid 1778540
SSU Count 1
Submitter University of Malaya
Taxid 1778540
Total Gap Length 0
Translation Table 11
tRNA Count (total) 63
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JRWY00000000.1