Escherichia flexneri
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers 2011EL-1251-4
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.82%
CheckM Contamination 0.64%
CheckM Strain Heterogeneity 16.67
5S Count 2
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 246
N50 Contigs 88,540 bp
Longest Contig 209,060 bp
Scaffold Count 239
N50 Scaffolds 88,540 bp
Longest Scaffold 209,060 bp
Genome Size 4,881,768 bp
Protein Count 4,681
Coding Density 87.65%
GC Percentage 50.60%
Ambiguous Bases 28
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM77359v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02954481
Country None
Date 2014-11-7
Genbank Assembly Accession GCA_000773595.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source stool
Latitude Longitude None
Molecule Count N/A
CDS Count 5,109
Refseq Category na
Seq Rel Date 2014/11/07
Spanned Gaps 7
Species Taxid 562
SSU Count 2
Submitter Centers for Disease Control and Prevention
Taxid 562
Total Gap Length 340
Translation Table 11
tRNA Count (total) 79
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JPXM00000000.1