Escherichia flexneri
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers F6097
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.07%
CheckM Contamination 0.88%
CheckM Strain Heterogeneity 33.33
5S Count 2
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 304
N50 Contigs 79,448 bp
Longest Contig 228,031 bp
Scaffold Count 291
N50 Scaffolds 79,448 bp
Longest Scaffold 228,031 bp
Genome Size 5,185,056 bp
Protein Count 5,090
Coding Density 87.26%
GC Percentage 50.33%
Ambiguous Bases 38
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM77355v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02954280
Country USA: Minnesota
Date 2014-11-07
Genbank Assembly Accession GCA_000773555.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source stool
Latitude Longitude None
Molecule Count N/A
CDS Count 5,622
Refseq Category na
Seq Rel Date 2014/11/07
Spanned Gaps 13
Species Taxid 562
SSU Count 1
Submitter Centers for Disease Control and Prevention
Taxid 562
Total Gap Length 996
Translation Table 11
tRNA Count (total) 79
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JPXJ00000000.1