Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Listeriaceae; g__Listeria; s__Listeria innocua
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Bacillales; f__Listeriaceae; g__Listeria; s__Listeria innocua
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Bacillales; f__Listeriaceae; g__Listeria; s__Listeria innocua
NCBI Strain Identifiers MOD1_LS888
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000195795.1)
Genome Characteristics
CheckM Completeness 99.45%
CheckM Contamination 0.55%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 12
N50 Contigs 373,247 bp
Longest Contig 1,433,054 bp
Scaffold Count 12
N50 Scaffolds 373,247 bp
Longest Scaffold 1,433,054 bp
Genome Size 2,890,907 bp
Protein Count 2,878
Coding Density 89.83%
GC Percentage 37.27%
Ambiguous Bases 10
GTDB representative GCA_000195795.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name LS888
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02769797
Country USA: FL
Date 2014-11-7
Genbank Assembly Accession GCA_000773035.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source various pet foods
Latitude Longitude None
Molecule Count N/A
CDS Count 2,909
Refseq Category na
Seq Rel Date 2014/11/07
Spanned Gaps 0
Species Taxid 1642
SSU Count 1
Submitter FDA/CFSAN
Taxid 1642
Total Gap Length 0
Translation Table 11
tRNA Count (total) 51
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JRYX00000000.1