Bifidobacterium dentium
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Actinomycetales; f__Bifidobacteriaceae; g__Bifidobacterium; s__Bifidobacterium dentium
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Bifidobacteriales; f__Bifidobacteriaceae; g__Bifidobacterium; s__Bifidobacterium dentium
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Bifidobacteriales; f__Bifidobacteriaceae; g__Bifidobacterium; s__Bifidobacterium dentium; x__Bifidobacterium dentium JCM 1195 = DSM 20436
NCBI Strain Identifiers DSM 20436
GTDB Type Material Designation type strain of species
GTDB Representative of Species False (representative is GCA_001042595.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 3
23S Count 2
tRNA Count 20
Contig Count 32
N50 Contigs 176,920 bp
Longest Contig 397,140 bp
Scaffold Count 32
N50 Scaffolds 176,920 bp
Longest Scaffold 397,140 bp
Genome Size 2,614,783 bp
Protein Count 2,140
Coding Density 88.41%
GC Percentage 58.50%
Ambiguous Bases N/A
GTDB representative GCA_001042595.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name DSM-20436
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02442045
Country None
Date 2014-11-4
Genbank Assembly Accession GCA_000771725.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 2,164
Refseq Category na
Seq Rel Date 2014/11/04
Spanned Gaps 0
Species Taxid 1689
SSU Count 3
Submitter Key Laboratory of Dairy BiotecInner Mongolia Agricultural University
Taxid 1150423
Total Gap Length 0
Translation Table 11
tRNA Count (total) 56
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master JDUY00000000.1