Bifidobacterium bifidum
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Actinomycetales; f__Bifidobacteriaceae; g__Bifidobacterium; s__Bifidobacterium bifidum
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Bifidobacteriales; f__Bifidobacteriaceae; g__Bifidobacterium; s__Bifidobacterium bifidum
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Bifidobacteriales; f__Bifidobacteriaceae; g__Bifidobacterium; s__Bifidobacterium bifidum; x__Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456
NCBI Strain Identifiers DSM 20456
GTDB Type Material Designation type strain of species
GTDB Representative of Species False (representative is GCA_001025135.1)
Genome Characteristics
CheckM Completeness 99.54%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 50
N50 Contigs 166,806 bp
Longest Contig 358,666 bp
Scaffold Count 50
N50 Scaffolds 166,806 bp
Longest Scaffold 358,666 bp
Genome Size 2,202,787 bp
Protein Count 1,848
Coding Density 85.98%
GC Percentage 62.67%
Ambiguous Bases N/A
GTDB representative GCA_001025135.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name DSM-20456
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02442030
Country None
Date 2014-11-4
Genbank Assembly Accession GCA_000771485.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 1,847
Refseq Category na
Seq Rel Date 2014/11/04
Spanned Gaps 0
Species Taxid 1681
SSU Count 1
Submitter Key Laboratory of Dairy BiotecInner Mongolia Agricultural University
Taxid 500634
Total Gap Length 0
Translation Table 11
tRNA Count (total) 48
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master JDUM00000000.1