Bifidobacterium pseudocatenulatum
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Actinomycetales; f__Bifidobacteriaceae; g__Bifidobacterium; s__Bifidobacterium pseudocatenulatum
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Bifidobacteriales; f__Bifidobacteriaceae; g__Bifidobacterium; s__Bifidobacterium pseudocatenulatum
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Bifidobacteriales; f__Bifidobacteriaceae; g__Bifidobacterium; s__Bifidobacterium pseudocatenulatum; x__Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505
NCBI Strain Identifiers DSM 20438
GTDB Type Material Designation type strain of species
GTDB Representative of Species False (representative is GCA_001025215.1)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.23%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 3
23S Count 4
tRNA Count 20
Contig Count 72
N50 Contigs 487,878 bp
Longest Contig 768,668 bp
Scaffold Count 72
N50 Scaffolds 487,878 bp
Longest Scaffold 768,668 bp
Genome Size 2,284,490 bp
Protein Count 1,869
Coding Density 87.75%
GC Percentage 56.44%
Ambiguous Bases N/A
GTDB representative GCA_001025215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name DSM-20438
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02442029
Country None
Date 2014-11-4
Genbank Assembly Accession GCA_000771445.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 1,853
Refseq Category na
Seq Rel Date 2014/11/04
Spanned Gaps 0
Species Taxid 28026
SSU Count 3
Submitter Key Laboratory of Dairy BiotecInner Mongolia Agricultural University
Taxid 547043
Total Gap Length 0
Translation Table 11
tRNA Count (total) 54
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master JDUK00000000.1