Escherichia flexneri
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers 2013EL-1320-c5
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.35%
CheckM Strain Heterogeneity 60.0
5S Count 3
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 301
N50 Contigs 64,942 bp
Longest Contig 147,661 bp
Scaffold Count 301
N50 Scaffolds 64,942 bp
Longest Scaffold 147,661 bp
Genome Size 4,711,769 bp
Protein Count 4,573
Coding Density 87.95%
GC Percentage 50.72%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM77025v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02951527
Country None
Date 2014-10-31
Genbank Assembly Accession GCA_000770255.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source stool from patient on cruising ship
Latitude Longitude None
Molecule Count N/A
CDS Count 4,956
Refseq Category na
Seq Rel Date 2014/10/31
Spanned Gaps 0
Species Taxid 562
SSU Count 1
Submitter Centers for Disease Control and Prevention
Taxid 562
Total Gap Length 0
Translation Table 11
tRNA Count (total) 75
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JPUD00000000.1