Porphyromonas_A cangingivalis
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Bacteroidales; f__Porphyromonadaceae; g__Porphyromonas_A; s__Porphyromonas_A cangingivalis
Filtered NCBI Taxonomy d__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Porphyromonadaceae; g__Porphyromonas; s__Porphyromonas cangingivalis
Unfiltered NCBI Taxonomy d__Bacteria; x__FCB group; x__Bacteroidetes/Chlorobi group; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Porphyromonadaceae; g__Porphyromonas; s__Porphyromonas cangingivalis
NCBI Strain Identifiers COT-109 OH1386
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_900638305.1)
Genome Characteristics
CheckM Completeness 99.21%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 65
N50 Contigs 100,405 bp
Longest Contig 233,232 bp
Scaffold Count 65
N50 Scaffolds 100,405 bp
Longest Scaffold 233,232 bp
Genome Size 2,441,844 bp
Protein Count 2,107
Coding Density 88.01%
GC Percentage 47.55%
Ambiguous Bases 62
GTDB representative GCA_900638305.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM76899v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03004337
Country United Kingdom: Leicestershire
Date 2014-10-27
Genbank Assembly Accession GCA_000768995.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source dog mouth
Latitude Longitude None
Molecule Count N/A
CDS Count 2,008
Refseq Category na
Seq Rel Date 2014/10/27
Spanned Gaps 0
Species Taxid 36874
SSU Count 7
Submitter UC Davis
Taxid 36874
Total Gap Length 0
Translation Table 11
tRNA Count (total) 46
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JQJD00000000.1