Undefined name (Failed Quality Check)
Isolate LQ 13 tRNAs
Taxonomic Information
GTDB Taxonomy Undefined (Failed Quality Check)
Filtered NCBI Taxonomy d__Bacteria; p__Spirochaetes; c__Spirochaetia; o__Spirochaetales; f__Spirochaetaceae; g__Alkalispirochaeta; s__Alkalispirochaeta odontotermitis
Unfiltered NCBI Taxonomy d__Bacteria; p__Spirochaetes; c__Spirochaetia; o__Spirochaetales; f__Spirochaetaceae; g__Alkalispirochaeta; s__Alkalispirochaeta odontotermitis
NCBI Strain Identifiers JC202
GTDB Type Material Designation type strain of species
GTDB Representative of Species False
Genome Characteristics
CheckM Completeness 63.74%
CheckM Contamination 24.0%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 0
23S Count 0
tRNA Count 13
Contig Count 275
N50 Contigs 13,807 bp
Longest Contig 49,303 bp
Scaffold Count 275
N50 Scaffolds 13,807 bp
Longest Scaffold 49,303 bp
Genome Size 3,826,243 bp
Protein Count 3,306
Coding Density 84.75%
GC Percentage 49.86%
Ambiguous Bases N/A
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM76805v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03000707
Country India: Gujarat; Rann of Kutch
Date 2014-10-23
Genbank Assembly Accession GCA_000768055.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 3,289
Refseq Category representative genome
Seq Rel Date 2014/10/23
Spanned Gaps 0
Species Taxid 1329640
SSU Count 0
Submitter UoH
Taxid 1329640
Total Gap Length 0
Translation Table 11
tRNA Count (total) 23
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master JRAS00000000.1