Pandoraea pnomenusa
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Burkholderiales; f__Burkholderiaceae; g__Pandoraea; s__Pandoraea pnomenusa
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Burkholderiaceae; g__Pandoraea; s__Pandoraea pnomenusa
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Betaproteobacteria; o__Burkholderiales; f__Burkholderiaceae; g__Pandoraea; s__Pandoraea pnomenusa
NCBI Strain Identifiers DSM 16536
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (9 genomes in species cluster)
Genome Characteristics
CheckM Completeness 98.68%
CheckM Contamination 0.06%
CheckM Strain Heterogeneity 0.0
5S Count 4
16S Count 4
23S Count 4
tRNA Count 20
Contig Count 1
N50 Contigs 5,389,285 bp
Longest Contig 5,389,285 bp
Scaffold Count 1
N50 Scaffolds 5,389,285 bp
Longest Scaffold 5,389,285 bp
Genome Size 5,389,285 bp
Protein Count 4,810
Coding Density 87.64%
GC Percentage 64.87%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Complete Genome
Assembly Name ASM76761v3
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03078809
Country United Kingdom
Date 2016-8-18
Genbank Assembly Accession GCA_000767615.3
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source cystic fibrosis patient
Latitude Longitude None
Molecule Count 1
CDS Count 4,753
Refseq Category representative genome
Seq Rel Date 2016/08/18
Spanned Gaps 0
Species Taxid 93220
SSU Count 4
Submitter University of Malaya
Taxid 93220
Total Gap Length 0
Translation Table 11
tRNA Count (total) 65
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master None