Helicobacter_A muridarum
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Campylobacterota; c__Campylobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter_A; s__Helicobacter_A muridarum
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Epsilonproteobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter muridarum
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; x__delta/epsilon subdivisions; c__Epsilonproteobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter muridarum
NCBI Strain Identifiers ST1
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (5 genomes in species cluster)
Genome Characteristics
CheckM Completeness 97.43%
CheckM Contamination 1.35%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 76
N50 Contigs 80,379 bp
Longest Contig 217,728 bp
Scaffold Count 76
N50 Scaffolds 80,379 bp
Longest Scaffold 217,728 bp
Genome Size 2,225,182 bp
Protein Count 1,970
Coding Density 85.32%
GC Percentage 32.63%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM76580v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03075563
Country Australia
Date 2019-05-22
Genbank Assembly Accession GCA_000765805.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source cecum
Latitude Longitude None
Molecule Count N/A
CDS Count 1,915
Refseq Category representative genome
Seq Rel Date 2019/05/22
Spanned Gaps 0
Species Taxid 216
SSU Count 1
Submitter Massachusetts Institute of Technology
Taxid 216
Total Gap Length 0
Translation Table 11
tRNA Count (total) 36
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master JRPD00000000.2