Helicobacter_C typhlonius
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Campylobacterota; c__Campylobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter_C; s__Helicobacter_C typhlonius
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Epsilonproteobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; x__delta/epsilon subdivisions; c__Epsilonproteobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter sp. MIT 03-1616
NCBI Strain Identifiers MIT 03-1616
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001460635.1)
Genome Characteristics
CheckM Completeness 99.35%
CheckM Contamination 0.71%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 45
N50 Contigs 188,951 bp
Longest Contig 263,249 bp
Scaffold Count 45
N50 Scaffolds 188,951 bp
Longest Scaffold 263,249 bp
Genome Size 1,899,163 bp
Protein Count 1,903
Coding Density 90.91%
GC Percentage 38.83%
Ambiguous Bases N/A
GTDB representative GCA_001460635.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM76568v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03075557
Country USA
Date 2019-05-22
Genbank Assembly Accession GCA_000765685.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source cecum
Latitude Longitude None
Molecule Count N/A
CDS Count 1,859
Refseq Category na
Seq Rel Date 2019/05/22
Spanned Gaps 0
Species Taxid 1548148
SSU Count 1
Submitter Massachusetts Institute of Technology
Taxid 1548148
Total Gap Length 0
Translation Table 11
tRNA Count (total) 36
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JROY00000000.2