Escherichia flexneri
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli FAP1
NCBI Strain Identifiers FAP1
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.71%
CheckM Strain Heterogeneity 83.33
5S Count 8
16S Count 8
23S Count 8
tRNA Count 20
Contig Count 5
N50 Contigs 4,874,704 bp
Longest Contig 4,874,704 bp
Scaffold Count 5
N50 Scaffolds 4,874,804 bp
Longest Scaffold 4,874,804 bp
Genome Size 5,254,632 bp
Protein Count 4,990
Coding Density 87.16%
GC Percentage 50.53%
Ambiguous Bases 8
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Chromosome
Assembly Name ASM76543v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03067748
Country Netherlands
Date 2014-10-10
Genbank Assembly Accession GCA_000765435.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source feces
Latitude Longitude None
Molecule Count 5
CDS Count 5,389
Refseq Category na
Seq Rel Date 2014/10/10
Spanned Gaps 2
Species Taxid 562
SSU Count 8
Submitter University Medical Center Utrecht
Taxid 1412834
Total Gap Length 200
Translation Table 11
tRNA Count (total) 94
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master None