Microbacterium profundi
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Actinomycetales; f__Microbacteriaceae; g__Microbacterium; s__Microbacterium profundi
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Micrococcales; f__Microbacteriaceae; g__Microbacterium; s__Microbacterium profundi
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Micrococcales; f__Microbacteriaceae; g__Microbacterium; s__Microbacterium profundi
NCBI Strain Identifiers Shh49
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 99.49%
CheckM Contamination 0.51%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 2
tRNA Count 20
Contig Count 12
N50 Contigs 2,199,627 bp
Longest Contig 2,199,627 bp
Scaffold Count 12
N50 Scaffolds 2,199,627 bp
Longest Scaffold 2,199,627 bp
Genome Size 3,369,357 bp
Protein Count 3,240
Coding Density 91.73%
GC Percentage 66.55%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM76337v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02947407
Country Pacific Ocean
Date 2014-10-3
Genbank Assembly Accession GCA_000763375.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source deep-sea sediment
Latitude Longitude 8.38 N 145.40 W
Molecule Count N/A
CDS Count 3,214
Refseq Category representative genome
Seq Rel Date 2014/10/03
Spanned Gaps 0
Species Taxid 450380
SSU Count 1
Submitter The second institute of oceanography, SOA
Taxid 450380
Total Gap Length 0
Translation Table 11
tRNA Count (total) 44
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master JPSY00000000.1