Lactiplantibacillus plantarum
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactiplantibacillus; s__Lactiplantibacillus plantarum
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus plantarum
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Bacilli; o__Lactobacillales; f__Lactobacillaceae; g__Lactobacillus; s__Lactobacillus plantarum; x__Lactobacillus plantarum CMPG5300
NCBI Strain Identifiers CMPG5300
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000615325.1)
Genome Characteristics
CheckM Completeness 99.07%
CheckM Contamination 2.78%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 48
N50 Contigs 295,840 bp
Longest Contig 580,283 bp
Scaffold Count 7
N50 Scaffolds 3,364,521 bp
Longest Scaffold 3,364,521 bp
Genome Size 3,507,828 bp
Protein Count 3,299
Coding Density 83.91%
GC Percentage 44.20%
Ambiguous Bases N/A
GTDB representative GCA_000615325.1
GTDB representative of species False
NCBI Metadata
Assembly Level Chromosome
Assembly Name ASM76295v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03083641
Country Belgium
Date 2014-10-14
Genbank Assembly Accession GCA_000762955.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source vagina of healthy woman
Latitude Longitude None
Molecule Count 7
CDS Count 3,354
Refseq Category na
Seq Rel Date 2014/10/14
Spanned Gaps 42
Species Taxid 1590
SSU Count 1
Submitter KU Leuven
Taxid 1304889
Total Gap Length 4200
Translation Table 11
tRNA Count (total) 57
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master AXZV00000000.1