Helicobacter_A saguini
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Campylobacterota; c__Campylobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter_A; s__Helicobacter_A saguini
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Epsilonproteobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter saguini
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; x__delta/epsilon subdivisions; c__Epsilonproteobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter saguini
NCBI Strain Identifiers MIT 97-6194
GTDB Type Material Designation not type material
GTDB Representative of Species True (5 genomes in species cluster)
Genome Characteristics
CheckM Completeness 95.87%
CheckM Contamination 0.94%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 3
tRNA Count 20
Contig Count 68
N50 Contigs 117,318 bp
Longest Contig 258,210 bp
Scaffold Count 68
N50 Scaffolds 117,318 bp
Longest Scaffold 258,210 bp
Genome Size 2,721,767 bp
Protein Count 2,480
Coding Density 89.22%
GC Percentage 34.90%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM76287v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03074666
Country None
Date 2019-05-22
Genbank Assembly Accession GCA_000762875.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source fecal sample
Latitude Longitude None
Molecule Count N/A
CDS Count 2,388
Refseq Category representative genome
Seq Rel Date 2019/05/22
Spanned Gaps 0
Species Taxid 1548018
SSU Count 5
Submitter Massachusetts Institute of Technology
Taxid 1548018
Total Gap Length 0
Translation Table 11
tRNA Count (total) 36
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master JRMP00000000.2