Helicobacter_C japonicus
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Campylobacterota; c__Campylobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter_C; s__Helicobacter_C japonicus
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Epsilonproteobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter japonicus
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; x__delta/epsilon subdivisions; c__Epsilonproteobacteria; o__Campylobacterales; f__Helicobacteraceae; g__Helicobacter; s__Helicobacter japonicus
NCBI Strain Identifiers MIT 01-6451
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 99.53%
CheckM Contamination 0.35%
CheckM Strain Heterogeneity 100.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 49
N50 Contigs 129,121 bp
Longest Contig 338,440 bp
Scaffold Count 49
N50 Scaffolds 129,121 bp
Longest Scaffold 338,440 bp
Genome Size 1,945,265 bp
Protein Count 1,966
Coding Density 93.21%
GC Percentage 35.73%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM76284v2
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03074667
Country None
Date 2019-05-22
Genbank Assembly Accession GCA_000762845.2
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source cecal sample
Latitude Longitude None
Molecule Count N/A
CDS Count 1,907
Refseq Category na
Seq Rel Date 2019/05/22
Spanned Gaps 0
Species Taxid 425400
SSU Count 1
Submitter Massachusetts Institute of Technology
Taxid 425400
Total Gap Length 0
Translation Table 11
tRNA Count (total) 36
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master JRMQ00000000.2