Rhodococcus fascians
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Rhodococcus; s__Rhodococcus fascians
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Nocardiaceae; g__Rhodococcus; s__Rhodococcus fascians
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Nocardiaceae; g__Rhodococcus; s__Rhodococcus fascians; x__Rhodococcus fascians LMG 3605
NCBI Strain Identifiers LMG 3605
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001894785.1)
Genome Characteristics
CheckM Completeness 99.94%
CheckM Contamination 2.16%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 67
N50 Contigs 151,383 bp
Longest Contig 440,007 bp
Scaffold Count 28
N50 Scaffolds 366,894 bp
Longest Scaffold 875,100 bp
Genome Size 5,443,363 bp
Protein Count 5,146
Coding Density 91.88%
GC Percentage 64.59%
Ambiguous Bases N/A
GTDB representative GCA_001894785.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name R_fas_LMG3605
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02570001
Country United Kingdom
Date 2014-9-30
Genbank Assembly Accession GCA_000761015.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,074
Refseq Category na
Seq Rel Date 2014/09/30
Spanned Gaps 39
Species Taxid 1828
SSU Count 2
Submitter Oregon State University
Taxid 1443902
Total Gap Length 6045
Translation Table 11
tRNA Count (total) 46
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JMEP00000000.1