Rhodococcus fascians
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Rhodococcus; s__Rhodococcus fascians
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Nocardiaceae; g__Rhodococcus; s__Rhodococcus fascians
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Nocardiaceae; g__Rhodococcus; s__Rhodococcus fascians; x__Rhodococcus fascians A78
NCBI Strain Identifiers A78
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001894785.1)
Genome Characteristics
CheckM Completeness 99.94%
CheckM Contamination 3.04%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 88
N50 Contigs 199,785 bp
Longest Contig 435,575 bp
Scaffold Count 41
N50 Scaffolds 487,747 bp
Longest Scaffold 876,867 bp
Genome Size 5,999,501 bp
Protein Count 5,705
Coding Density 91.43%
GC Percentage 64.42%
Ambiguous Bases N/A
GTDB representative GCA_001894785.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name R_fas_A78
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02569996
Country USA: Pennsylvania
Date 2014-9-30
Genbank Assembly Accession GCA_000760775.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 5,610
Refseq Category na
Seq Rel Date 2014/09/30
Spanned Gaps 47
Species Taxid 1828
SSU Count 2
Submitter Oregon State University
Taxid 1443898
Total Gap Length 8209
Translation Table 11
tRNA Count (total) 46
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JMEU00000000.1