Flavonifractor sp000508885
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Firmicutes_A; c__Clostridia; o__Oscillospirales; f__Oscillospiraceae; g__Flavonifractor; s__Flavonifractor sp000508885
Filtered NCBI Taxonomy d__Bacteria; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Ruminococcaceae; g__Flavonifractor; s__Flavonifractor plautii
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Firmicutes; c__Clostridia; o__Clostridiales; f__Ruminococcaceae; g__Flavonifractor; s__Flavonifractor plautii; x__Flavonifractor plautii 1_3_50AFAA
NCBI Strain Identifiers 1_3_50AFAA
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000508885.1)
Genome Characteristics
CheckM Completeness 98.15%
CheckM Contamination 0.81%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 2
23S Count 1
tRNA Count 20
Contig Count 189
N50 Contigs 45,530 bp
Longest Contig 204,963 bp
Scaffold Count 61
N50 Scaffolds 808,090 bp
Longest Scaffold 939,500 bp
Genome Size 4,383,642 bp
Protein Count 4,266
Coding Density 85.77%
GC Percentage 60.53%
Ambiguous Bases 8
GTDB representative GCA_000508885.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name Clos_orbi_1_3_50AFAA_V1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN00103468
Country None
Date 2014-09-30
Genbank Assembly Accession GCA_000760655.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 4,264
Refseq Category na
Seq Rel Date 2014/09/30
Spanned Gaps 128
Species Taxid 292800
SSU Count 2
Submitter Broad Institute
Taxid 742738
Total Gap Length 60485
Translation Table 11
tRNA Count (total) 55
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master ADLO00000000.1