Prevotella melaninogenica
Isolate HQ 5S/16S/23S 17 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Bacteroidales; f__Bacteroidaceae; g__Prevotella; s__Prevotella melaninogenica
Filtered NCBI Taxonomy d__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Prevotellaceae; g__Prevotella; s__Prevotella melaninogenica
Unfiltered NCBI Taxonomy d__Bacteria; x__FCB group; x__Bacteroidetes/Chlorobi group; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Prevotellaceae; g__Prevotella; s__Prevotella melaninogenica; x__Prevotella melaninogenica DNF00666
NCBI Strain Identifiers DNF00666
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000144405.1)
Genome Characteristics
CheckM Completeness 97.89%
CheckM Contamination 0.47%
CheckM Strain Heterogeneity 66.67
5S Count 1
16S Count 1
23S Count 1
tRNA Count 17
Contig Count 553
N50 Contigs 8,133 bp
Longest Contig 43,495 bp
Scaffold Count 553
N50 Scaffolds 8,133 bp
Longest Scaffold 43,495 bp
Genome Size 2,976,254 bp
Protein Count 2,489
Coding Density 83.50%
GC Percentage 41.36%
Ambiguous Bases 26
GTDB representative GCA_000144405.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name 04_NF40_HMP661v01
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02850972
Country None
Date 2014-9-26
Genbank Assembly Accession GCA_000759305.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source vagina
Latitude Longitude None
Molecule Count N/A
CDS Count 2,395
Refseq Category na
Seq Rel Date 2014/09/26
Spanned Gaps 0
Species Taxid 28132
SSU Count 1
Submitter J. Craig Venter Institute
Taxid 1401073
Total Gap Length 0
Translation Table 11
tRNA Count (total) 30
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JRNS00000000.1