Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Bacteroidota; c__Bacteroidia; o__Bacteroidales; f__Bacteroidaceae; g__Prevotella; s__Prevotella bivia
Filtered NCBI Taxonomy d__Bacteria; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Prevotellaceae; g__Prevotella; s__Prevotella bivia
Unfiltered NCBI Taxonomy d__Bacteria; x__FCB group; x__Bacteroidetes/Chlorobi group; p__Bacteroidetes; c__Bacteroidia; o__Bacteroidales; f__Prevotellaceae; g__Prevotella; s__Prevotella bivia; x__Prevotella bivia DNF00188
NCBI Strain Identifiers DNF00188
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000262545.1)
Genome Characteristics
CheckM Completeness 99.66%
CheckM Contamination 0.54%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 14
Contig Count 158
N50 Contigs 50,986 bp
Longest Contig 138,516 bp
Scaffold Count 158
N50 Scaffolds 50,986 bp
Longest Scaffold 138,516 bp
Genome Size 2,527,024 bp
Protein Count 2,211
Coding Density 87.68%
GC Percentage 39.85%
Ambiguous Bases N/A
GTDB representative GCA_000262545.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name 04_NF_x40_HMP1651v01
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02850947
Country None
Date 2014-9-26
Genbank Assembly Accession GCA_000759045.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source vagina
Latitude Longitude None
Molecule Count N/A
CDS Count 2,201
Refseq Category na
Seq Rel Date 2014/09/26
Spanned Gaps 0
Species Taxid 28125
SSU Count 1
Submitter JCVI
Taxid 1287476
Total Gap Length 0
Translation Table 11
tRNA Count (total) 38
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JRNF00000000.1