Piscirickettsia salmonis
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Piscirickettsiales; f__Piscirickettsiaceae; g__Piscirickettsia; s__Piscirickettsia salmonis
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Thiotrichales; f__Piscirickettsiaceae; g__Piscirickettsia; s__Piscirickettsia salmonis
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Thiotrichales; f__Piscirickettsiaceae; g__Piscirickettsia; s__Piscirickettsia salmonis; x__Piscirickettsia salmonis EM-90
NCBI Strain Identifiers EM-90
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000297215.2)
Genome Characteristics
CheckM Completeness 98.81%
CheckM Contamination 0.97%
CheckM Strain Heterogeneity 0.0
5S Count 5
16S Count 1
23S Count 4
tRNA Count 20
Contig Count 534
N50 Contigs 13,604 bp
Longest Contig 73,135 bp
Scaffold Count 534
N50 Scaffolds 13,604 bp
Longest Scaffold 73,135 bp
Genome Size 3,035,439 bp
Protein Count 3,337
Coding Density 83.52%
GC Percentage 39.99%
Ambiguous Bases 1
GTDB representative GCA_000297215.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM75848v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN03068711
Country Chile
Date 2014-9-26
Genbank Assembly Accession GCA_000758485.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 3,224
Refseq Category na
Seq Rel Date 2014/09/26
Spanned Gaps 0
Species Taxid 1238
SSU Count 1
Submitter Fraunhofer Chile Research Center for Systems Biotechnology Bio-Computing Division
Taxid 1435375
Total Gap Length 0
Translation Table 11
tRNA Count (total) 54
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JRHP00000000.1