Spirochaeta_D lutea
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Spirochaetota; c__Spirochaetia; o__Spirochaetales; f__Salinispiraceae; g__Spirochaeta_D; s__Spirochaeta_D lutea
Filtered NCBI Taxonomy d__Bacteria; p__Spirochaetes; c__Spirochaetia; o__Spirochaetales; f__Spirochaetaceae; g__Spirochaeta; s__Spirochaeta lutea
Unfiltered NCBI Taxonomy d__Bacteria; p__Spirochaetes; c__Spirochaetia; o__Spirochaetales; f__Spirochaetaceae; g__Spirochaeta; s__Spirochaeta lutea
NCBI Strain Identifiers JC230
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 5
23S Count 9
tRNA Count 19
Contig Count 94
N50 Contigs 140,619 bp
Longest Contig 348,628 bp
Scaffold Count 72
N50 Scaffolds 221,765 bp
Longest Scaffold 360,151 bp
Genome Size 3,532,909 bp
Protein Count 2,960
Coding Density 90.26%
GC Percentage 53.76%
Ambiguous Bases 12
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name Spiroch1.0
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02708690
Country India: Kutch; Gujarat
Date 2014-9-25
Genbank Assembly Accession GCA_000758165.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source soil
Latitude Longitude None
Molecule Count N/A
CDS Count 2,960
Refseq Category representative genome
Seq Rel Date 2014/09/25
Spanned Gaps 22
Species Taxid 1480694
SSU Count 5
Submitter JNTU Hyderabad
Taxid 1480694
Total Gap Length 1326
Translation Table 11
tRNA Count (total) 41
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master JNUP00000000.1