Salmonella enterica
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica; sb__Salmonella enterica subsp. enterica; x__Salmonella enterica subsp. enterica serovar Bareilly; x__Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000962
NCBI Strain Identifiers CFSAN000962
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000006945.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.04%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 390
N50 Contigs 32,139 bp
Longest Contig 197,334 bp
Scaffold Count 389
N50 Scaffolds 32,139 bp
Longest Scaffold 197,334 bp
Genome Size 4,756,891 bp
Protein Count 4,567
Coding Density 87.66%
GC Percentage 52.21%
Ambiguous Bases N/A
GTDB representative GCA_000006945.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name CFSAN000962_01.0
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN01942271
Country USA: NY
Date 2014-9-25
Genbank Assembly Accession GCA_000757955.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source stool
Latitude Longitude None
Molecule Count N/A
CDS Count 4,824
Refseq Category na
Seq Rel Date 2014/09/25
Spanned Gaps 1
Species Taxid 28901
SSU Count 1
Submitter FDA
Taxid 1182192
Total Gap Length 24
Translation Table 11
tRNA Count (total) 72
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JRLP00000000.1