Pseudomonas aeruginosa
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas aeruginosa
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Pseudomonadales; f__Pseudomonadaceae; g__Pseudomonas; s__Pseudomonas sp. YS-1p
NCBI Strain Identifiers YS-1p
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001457615.1)
Genome Characteristics
CheckM Completeness 99.68%
CheckM Contamination 0.14%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 2
23S Count 2
tRNA Count 20
Contig Count 103
N50 Contigs 198,864 bp
Longest Contig 494,854 bp
Scaffold Count 36
N50 Scaffolds 938,911 bp
Longest Scaffold 1,241,789 bp
Genome Size 6,380,264 bp
Protein Count 5,856
Coding Density 89.70%
GC Percentage 66.48%
Ambiguous Bases N/A
GTDB representative GCA_001457615.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name PRTA
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02953214
Country USA: Yellow Stone National Park
Date 2014-9-23
Genbank Assembly Accession GCA_000757505.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source decaying wood from a thermal pond
Latitude Longitude None
Molecule Count N/A
CDS Count 6,011
Refseq Category na
Seq Rel Date 2014/09/23
Spanned Gaps 67
Species Taxid 1534978
SSU Count 2
Submitter Oklahoma State University
Taxid 1534978
Total Gap Length 3757
Translation Table 11
tRNA Count (total) 53
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JPYP00000000.1