Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Yersinia; s__Yersinia pestis
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Yersiniaceae; g__Yersinia; s__Yersinia pestis
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Yersiniaceae; g__Yersinia; x__Yersinia pseudotuberculosis complex; s__Yersinia pestis
NCBI Strain Identifiers Colorado 92
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_900460465.1)
Genome Characteristics
CheckM Completeness 99.68%
CheckM Contamination 0.34%
CheckM Strain Heterogeneity 50.0
5S Count 6
16S Count 5
23S Count 6
tRNA Count 20
Contig Count 59
N50 Contigs 147,185 bp
Longest Contig 273,098 bp
Scaffold Count 7
N50 Scaffolds 1,060,995 bp
Longest Scaffold 1,724,217 bp
Genome Size 4,719,680 bp
Protein Count 4,243
Coding Density 82.92%
GC Percentage 47.64%
Ambiguous Bases 4
GTDB representative GCA_900460465.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name YAU
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02923783
Country None
Date 2014-9-16
Genbank Assembly Accession GCA_000754785.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 4,439
Refseq Category na
Seq Rel Date 2014/09/16
Spanned Gaps 52
Species Taxid 632
SSU Count 3
Submitter Los Alamos National Laboratory
Taxid 632
Total Gap Length 5200
Translation Table 11
tRNA Count (total) 67
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JPMB00000000.1