Escherichia flexneri
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Shigella; s__Shigella flexneri
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Shigella; s__Shigella flexneri
NCBI Strain Identifiers ATCC 12022
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.39%
CheckM Contamination 1.05%
CheckM Strain Heterogeneity 18.75
5S Count 7
16S Count 4
23S Count 3
tRNA Count 19
Contig Count 207
N50 Contigs 48,782 bp
Longest Contig 142,347 bp
Scaffold Count 10
N50 Scaffolds 2,624,098 bp
Longest Scaffold 2,624,098 bp
Genome Size 4,533,554 bp
Protein Count 4,589
Coding Density 85.57%
GC Percentage 50.69%
Ambiguous Bases 9
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name SFC
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02905008
Country None
Date 2014-9-15
Genbank Assembly Accession GCA_000754175.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 4,979
Refseq Category na
Seq Rel Date 2014/09/15
Spanned Gaps 197
Species Taxid 623
SSU Count 1
Submitter Los Alamos National Laboratory
Taxid 623
Total Gap Length 19700
Translation Table 11
tRNA Count (total) 95
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JPPN00000000.1