Escherichia flexneri
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers E. coli
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.62%
CheckM Contamination 0.14%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 2
23S Count 3
tRNA Count 20
Contig Count 187
N50 Contigs 93,669 bp
Longest Contig 327,103 bp
Scaffold Count 111
N50 Scaffolds 142,991 bp
Longest Scaffold 395,954 bp
Genome Size 5,163,809 bp
Protein Count 4,987
Coding Density 88.06%
GC Percentage 50.70%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name FHI45
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA2593927
Country Norway
Date 2014-9-6
Genbank Assembly Accession GCA_000753115.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Human faeces
Latitude Longitude None
Molecule Count N/A
CDS Count 5,364
Refseq Category na
Seq Rel Date 2014/09/06
Spanned Gaps 76
Species Taxid 562
SSU Count 4
Submitter NTNU
Taxid 562
Total Gap Length 760
Translation Table 11
tRNA Count (total) 81
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CCQM00000000.1