Escherichia coli_D
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli_D
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers E. coli
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000026325.2)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.09%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 2
23S Count 3
tRNA Count 18
Contig Count 119
N50 Contigs 121,709 bp
Longest Contig 465,500 bp
Scaffold Count 89
N50 Scaffolds 136,546 bp
Longest Scaffold 475,336 bp
Genome Size 5,075,622 bp
Protein Count 4,821
Coding Density 88.28%
GC Percentage 50.42%
Ambiguous Bases N/A
GTDB representative GCA_000026325.2
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name FHI73
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA2593953
Country Norway
Date 2014-9-6
Genbank Assembly Accession GCA_000753075.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Human faeces
Latitude Longitude None
Molecule Count N/A
CDS Count 5,204
Refseq Category na
Seq Rel Date 2014/09/06
Spanned Gaps 30
Species Taxid 562
SSU Count 2
Submitter NTNU
Taxid 562
Total Gap Length 300
Translation Table 11
tRNA Count (total) 81
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CCQR00000000.1