Escherichia dysenteriae
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia dysenteriae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers E. coli
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002949675.1)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.33%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 2
23S Count 2
tRNA Count 18
Contig Count 298
N50 Contigs 81,465 bp
Longest Contig 172,996 bp
Scaffold Count 159
N50 Scaffolds 110,673 bp
Longest Scaffold 255,332 bp
Genome Size 5,293,411 bp
Protein Count 5,128
Coding Density 87.54%
GC Percentage 50.32%
Ambiguous Bases N/A
GTDB representative GCA_002949675.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name FHI5
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA2593892
Country Norway
Date 2014-9-6
Genbank Assembly Accession GCA_000752775.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Human faeces
Latitude Longitude None
Molecule Count N/A
CDS Count 5,610
Refseq Category na
Seq Rel Date 2014/09/06
Spanned Gaps 139
Species Taxid 562
SSU Count 2
Submitter NTNU
Taxid 562
Total Gap Length 1390
Translation Table 11
tRNA Count (total) 81
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CCQC00000000.1