Escherichia flexneri
Isolate HQ 5S/16S/23S 18 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers E. coli
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.32%
CheckM Contamination 0.1%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 2
23S Count 1
tRNA Count 18
Contig Count 312
N50 Contigs 97,269 bp
Longest Contig 315,097 bp
Scaffold Count 151
N50 Scaffolds 125,887 bp
Longest Scaffold 384,100 bp
Genome Size 5,161,255 bp
Protein Count 5,064
Coding Density 87.82%
GC Percentage 50.38%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name FHI16
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA2593902
Country Norway
Date 2014-9-6
Genbank Assembly Accession GCA_000752595.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Fermented sausage
Latitude Longitude None
Molecule Count N/A
CDS Count 5,491
Refseq Category na
Seq Rel Date 2014/09/06
Spanned Gaps 161
Species Taxid 562
SSU Count 2
Submitter NTNU
Taxid 562
Total Gap Length 1610
Translation Table 11
tRNA Count (total) 77
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CCQE00000000.1