Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia flexneri
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
NCBI Strain Identifiers E. coli
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002950215.1)
Genome Characteristics
CheckM Completeness 99.97%
CheckM Contamination 0.38%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 2
23S Count 1
tRNA Count 11
Contig Count 463
N50 Contigs 37,447 bp
Longest Contig 107,225 bp
Scaffold Count 453
N50 Scaffolds 37,447 bp
Longest Scaffold 107,225 bp
Genome Size 5,115,251 bp
Protein Count 5,035
Coding Density 87.65%
GC Percentage 50.29%
Ambiguous Bases N/A
GTDB representative GCA_002950215.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name FHI61
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMEA2593941
Country Norway
Date 2014-9-6
Genbank Assembly Accession GCA_000752515.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Human faeces
Latitude Longitude None
Molecule Count N/A
CDS Count 5,437
Refseq Category na
Seq Rel Date 2014/09/06
Spanned Gaps 10
Species Taxid 562
SSU Count 2
Submitter NTNU
Taxid 562
Total Gap Length 100
Translation Table 11
tRNA Count (total) 22
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master CCQL00000000.1