Mycobacterium tuberculosis
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; s__Mycobacterium tuberculosis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Mycobacteriaceae; g__Mycobacterium; x__Mycobacterium tuberculosis complex; s__Mycobacterium tuberculosis; x__Mycobacterium tuberculosis variant bovis
NCBI Strain Identifiers 09-1192
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000195955.2)
Genome Characteristics
CheckM Completeness 99.78%
CheckM Contamination 0.0%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 56
N50 Contigs 163,375 bp
Longest Contig 393,055 bp
Scaffold Count 56
N50 Scaffolds 163,375 bp
Longest Scaffold 393,055 bp
Genome Size 4,334,537 bp
Protein Count 4,060
Coding Density 90.26%
GC Percentage 65.59%
Ambiguous Bases N/A
GTDB representative GCA_000195955.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name ASM74980v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02902636
Country Argentina: Buenos Aires; Balcarce
Date 2014-09-08
Genbank Assembly Accession GCA_000749805.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source tissue sample
Latitude Longitude None
Molecule Count N/A
CDS Count 4,245
Refseq Category na
Seq Rel Date 2014/09/08
Spanned Gaps 0
Species Taxid 1773
SSU Count 1
Submitter South American Mycobacterium bovis WGS
Taxid 1765
Total Gap Length 0
Translation Table 11
tRNA Count (total) 45
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JQEO00000000.1