Salmonella enterica
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica; sb__Salmonella enterica subsp. enterica; x__Salmonella enterica subsp. enterica serovar Bareilly; x__Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN001099
NCBI Strain Identifiers CFSAN001099
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000006945.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.14%
CheckM Strain Heterogeneity 66.67
5S Count 3
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 188
N50 Contigs 68,749 bp
Longest Contig 232,353 bp
Scaffold Count 188
N50 Scaffolds 68,749 bp
Longest Scaffold 232,353 bp
Genome Size 4,765,179 bp
Protein Count 4,522
Coding Density 87.66%
GC Percentage 52.18%
Ambiguous Bases N/A
GTDB representative GCA_000006945.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name CFSAN001099_01.0
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN01816353
Country India
Date 2014-9-5
Genbank Assembly Accession GCA_000748705.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Tuna; Frozen Ground
Latitude Longitude None
Molecule Count N/A
CDS Count 4,799
Refseq Category na
Seq Rel Date 2014/09/05
Spanned Gaps 0
Species Taxid 28901
SSU Count 1
Submitter FDA
Taxid 1208624
Total Gap Length 0
Translation Table 11
tRNA Count (total) 70
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JRBQ00000000.1