Salmonella enterica
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Salmonella; s__Salmonella enterica; sb__Salmonella enterica subsp. enterica; x__Salmonella enterica subsp. enterica serovar Bareilly; x__Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000959
NCBI Strain Identifiers CFSAN000959
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_000006945.2)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.04%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 156
N50 Contigs 74,144 bp
Longest Contig 227,689 bp
Scaffold Count 156
N50 Scaffolds 74,144 bp
Longest Scaffold 227,689 bp
Genome Size 4,764,644 bp
Protein Count 4,497
Coding Density 87.64%
GC Percentage 52.18%
Ambiguous Bases N/A
GTDB representative GCA_000006945.2
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name CFSAN000959_01.0
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN01942283
Country USA: NY
Date 2014-9-5
Genbank Assembly Accession GCA_000748485.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source urine
Latitude Longitude None
Molecule Count N/A
CDS Count 4,776
Refseq Category na
Seq Rel Date 2014/09/05
Spanned Gaps 0
Species Taxid 28901
SSU Count 1
Submitter FDA
Taxid 1182189
Total Gap Length 0
Translation Table 11
tRNA Count (total) 72
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JRCC00000000.1