Rhodococcus qingshengii
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Mycobacteriales; f__Mycobacteriaceae; g__Rhodococcus; s__Rhodococcus qingshengii
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Nocardiaceae; g__Rhodococcus; s__Rhodococcus erythropolis
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Corynebacteriales; f__Nocardiaceae; g__Rhodococcus; s__Rhodococcus erythropolis
NCBI Strain Identifiers JCM 6824
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001646745.1)
Genome Characteristics
CheckM Completeness 99.56%
CheckM Contamination 0.09%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 284
N50 Contigs 174,909 bp
Longest Contig 335,530 bp
Scaffold Count 198
N50 Scaffolds 406,768 bp
Longest Scaffold 1,593,569 bp
Genome Size 7,023,610 bp
Protein Count 6,750
Coding Density 90.81%
GC Percentage 62.30%
Ambiguous Bases N/A
GTDB representative GCA_001646745.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM74774v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMD00019512
Country None
Date 2014-9-2
Genbank Assembly Accession GCA_000747745.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 6,576
Refseq Category na
Seq Rel Date 2014/09/02
Spanned Gaps 86
Species Taxid 1833
SSU Count 3
Submitter National Institute of Advanced Industrial Science and Technology
Taxid 1833
Total Gap Length 8091
Translation Table 11
tRNA Count (total) 51
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master BBLL00000000.1