Escherichia dysenteriae
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia dysenteriae
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Gammaproteobacteria; o__Enterobacterales; f__Enterobacteriaceae; g__Escherichia; s__Escherichia coli; x__Escherichia coli O157:H7; x__Escherichia coli O157:H7 str. T1543_06
NCBI Strain Identifiers T1543_06
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_002949675.1)
Genome Characteristics
CheckM Completeness 99.59%
CheckM Contamination 0.98%
CheckM Strain Heterogeneity 0.0
5S Count 2
16S Count 1
23S Count 1
tRNA Count 19
Contig Count 560
N50 Contigs 19,193 bp
Longest Contig 83,776 bp
Scaffold Count 560
N50 Scaffolds 19,193 bp
Longest Scaffold 83,776 bp
Genome Size 5,292,880 bp
Protein Count 5,511
Coding Density 87.41%
GC Percentage 50.21%
Ambiguous Bases 2
GTDB representative GCA_002949675.1
GTDB representative of species False
NCBI Metadata
Assembly Level Contig
Assembly Name O157_T154306_454
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02317210
Country Sweden
Date 2014-9-3
Genbank Assembly Accession GCA_000747455.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source cattle
Latitude Longitude None
Molecule Count N/A
CDS Count 5,915
Refseq Category na
Seq Rel Date 2014/09/03
Spanned Gaps 0
Species Taxid 562
SSU Count 1
Submitter National Veterinary Institute (SVA)
Taxid 1387071
Total Gap Length 0
Translation Table 11
tRNA Count (total) 81
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JJOK00000000.1