Thermopetrobacter sp000746275
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Thermopetrobacteraceae; g__Thermopetrobacter; s__Thermopetrobacter sp000746275
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__; f__; g__Thermopetrobacter; s__
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; x__unclassified Alphaproteobacteria; g__Thermopetrobacter; s__Thermopetrobacter sp. TC1
NCBI Strain Identifiers TC-1
GTDB Type Material Designation not type material
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 0.43%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 28
N50 Contigs 167,698 bp
Longest Contig 965,280 bp
Scaffold Count 19
N50 Scaffolds 258,231 bp
Longest Scaffold 1,068,663 bp
Genome Size 2,608,923 bp
Protein Count 2,223
Coding Density 83.25%
GC Percentage 62.02%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM74627v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02746018
Country Pacific Ocean: Tow Cam vent field; Eastern Lau Spreading Center; Southwestern Pacific
Date 2014-8-28
Genbank Assembly Accession GCA_000746275.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 2,222
Refseq Category na
Seq Rel Date 2014/08/28
Spanned Gaps 9
Species Taxid 1495045
SSU Count 1
Submitter DOE Joint Genome Institute
Taxid 1495045
Total Gap Length 2021
Translation Table 11
tRNA Count (total) 45
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JQKX00000000.1