Rhizobium rhizogenes_B
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Rhizobiaceae; g__Rhizobium; s__Rhizobium rhizogenes_B
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Rhizobiaceae; g__Agrobacterium; s__Agrobacterium rhizogenes
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Rhizobiaceae; x__Rhizobium/Agrobacterium group; g__Agrobacterium; s__Agrobacterium rhizogenes
NCBI Strain Identifiers YR147
GTDB Type Material Designation not type material
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 100.0%
CheckM Contamination 1.49%
CheckM Strain Heterogeneity 0.0
5S Count 1
16S Count 2
23S Count 1
tRNA Count 20
Contig Count 45
N50 Contigs 865,305 bp
Longest Contig 1,856,312 bp
Scaffold Count 44
N50 Scaffolds 865,305 bp
Longest Scaffold 1,856,312 bp
Genome Size 7,318,924 bp
Protein Count 6,972
Coding Density 87.53%
GC Percentage 59.94%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM74572v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02787132
Country None
Date 2014-8-28
Genbank Assembly Accession GCA_000745725.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 6,961
Refseq Category na
Seq Rel Date 2014/08/28
Spanned Gaps 1
Species Taxid 359
SSU Count 2
Submitter DOE Joint Genome Institute
Taxid 359
Total Gap Length 1585
Translation Table 11
tRNA Count (total) 50
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JQJW00000000.1