Streptacidiphilus rugosus
Isolate HQ 5S/16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Actinobacteriota; c__Actinomycetia; o__Streptomycetales; f__Streptomycetaceae; g__Streptacidiphilus; s__Streptacidiphilus rugosus
Filtered NCBI Taxonomy d__Bacteria; p__Actinobacteria; c__Actinobacteria; o__Streptomycetales; f__Streptomycetaceae; g__Streptacidiphilus; s__Streptacidiphilus rugosus
Unfiltered NCBI Taxonomy d__Bacteria; x__Terrabacteria group; p__Actinobacteria; c__Actinobacteria; o__Streptomycetales; f__Streptomycetaceae; g__Streptacidiphilus; s__Streptacidiphilus rugosus; x__Streptacidiphilus rugosus AM-16
NCBI Strain Identifiers AM-16
GTDB Type Material Designation type strain of species
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 99.47%
CheckM Contamination 3.05%
CheckM Strain Heterogeneity 58.33
5S Count 8
16S Count 9
23S Count 9
tRNA Count 20
Contig Count 4
N50 Contigs 7,115,445 bp
Longest Contig 7,115,445 bp
Scaffold Count 4
N50 Scaffolds 7,115,445 bp
Longest Scaffold 7,115,445 bp
Genome Size 9,002,860 bp
Protein Count 8,313
Coding Density 86.45%
GC Percentage 71.80%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM74465v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02745414
Country None
Date 2014-8-28
Genbank Assembly Accession GCA_000744655.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 8,154
Refseq Category representative genome
Seq Rel Date 2014/08/28
Spanned Gaps 0
Species Taxid 405783
SSU Count 9
Submitter DOE Joint Genome Institute
Taxid 981369
Total Gap Length 0
Translation Table 11
tRNA Count (total) 74
Type Material assembly from type material
Unspanned Gaps 0
Version Status latest
WGS Master JQMJ00000000.1