Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Rhizobiaceae; g__Rhizobium; s__Rhizobium alamii
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Rhizobiaceae; g__Rhizobium; s__Rhizobium alamii
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhizobiales; f__Rhizobiaceae; x__Rhizobium/Agrobacterium group; g__Rhizobium; s__Rhizobium alamii
NCBI Strain Identifiers YR540
GTDB Type Material Designation not type material
GTDB Representative of Species True (29 genomes in species cluster)
Genome Characteristics
CheckM Completeness 99.91%
CheckM Contamination 1.84%
CheckM Strain Heterogeneity 33.33
5S Count 2
16S Count 1
23S Count 2
tRNA Count 20
Contig Count 34
N50 Contigs 436,692 bp
Longest Contig 723,251 bp
Scaffold Count 33
N50 Scaffolds 490,352 bp
Longest Scaffold 811,971 bp
Genome Size 7,315,509 bp
Protein Count 7,016
Coding Density 88.62%
GC Percentage 60.12%
Ambiguous Bases N/A
GTDB representative of species True
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM74450v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02787137
Country None
Date 2014-8-28
Genbank Assembly Accession GCA_000744505.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source None
Latitude Longitude None
Molecule Count N/A
CDS Count 7,002
Refseq Category representative genome
Seq Rel Date 2014/08/28
Spanned Gaps 1
Species Taxid 492774
SSU Count 1
Submitter DOE Joint Genome Institute
Taxid 492774
Total Gap Length 10
Translation Table 11
tRNA Count (total) 48
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JQMB00000000.1