Ruegeria halocynthiae_B
Isolate HQ 5S/16S/23S 19 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodobacterales; f__Rhodobacteraceae; g__Ruegeria; s__Ruegeria halocynthiae_B
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodobacterales; f__Rhodobacteraceae; g__Ruegeria; s__Ruegeria halocynthiae
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Rhodobacterales; f__Rhodobacteraceae; g__Ruegeria; s__Ruegeria halocynthiae
NCBI Strain Identifiers MOLA R1/13b;13b;MOLA R1
GTDB Type Material Designation not type material
GTDB Representative of Species True (1 genome in species cluster)
Genome Characteristics
CheckM Completeness 99.25%
CheckM Contamination 0.11%
CheckM Strain Heterogeneity 0.0
5S Count 3
16S Count 3
23S Count 2
tRNA Count 19
Contig Count 19
N50 Contigs 892,251 bp
Longest Contig 1,291,151 bp
Scaffold Count 19
N50 Scaffolds 892,251 bp
Longest Scaffold 1,291,151 bp
Genome Size 4,314,497 bp
Protein Count 4,214
Coding Density 90.53%
GC Percentage 58.34%
Ambiguous Bases 66
GTDB representative of species True
NCBI Metadata
Assembly Level Contig
Assembly Name ASM74370v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02997979
Country France: Banyuls Bay
Date 2014-8-26
Genbank Assembly Accession GCA_000743705.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source Crambe crambe sponge
Latitude Longitude None
Molecule Count N/A
CDS Count 4,159
Refseq Category representative genome
Seq Rel Date 2014/08/26
Spanned Gaps 0
Species Taxid 985054
SSU Count 3
Submitter UPMC Observatoire de Banyuls
Taxid 985054
Total Gap Length 0
Translation Table 11
tRNA Count (total) 52
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JQEZ00000000.1