Sphingobium sp001713415
Isolate HQ 16S/23S 20 tRNAs
Taxonomic Information
GTDB Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae; g__Sphingobium; s__Sphingobium sp001713415
Filtered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae; g__Sphingobium; s__
Unfiltered NCBI Taxonomy d__Bacteria; p__Proteobacteria; c__Alphaproteobacteria; o__Sphingomonadales; f__Sphingomonadaceae; g__Sphingobium; s__Sphingobium sp. ba1
NCBI Strain Identifiers ba1
GTDB Type Material Designation not type material
GTDB Representative of Species False (representative is GCA_001713415.1)
Genome Characteristics
CheckM Completeness 98.81%
CheckM Contamination 0.68%
CheckM Strain Heterogeneity 0.0
5S Count 0
16S Count 1
23S Count 1
tRNA Count 20
Contig Count 493
N50 Contigs 16,455 bp
Longest Contig 83,145 bp
Scaffold Count 87
N50 Scaffolds 3,212,693 bp
Longest Scaffold 3,212,693 bp
Genome Size 4,459,791 bp
Protein Count 4,440
Coding Density 89.31%
GC Percentage 62.97%
Ambiguous Bases 93
GTDB representative GCA_001713415.1
GTDB representative of species False
NCBI Metadata
Assembly Level Scaffold
Assembly Name ASM74365v1
Assembly Type n/a
Bioproject PRJNA224116
Biosample SAMN02911527
Country Italy: Bari
Date 2014-8-26
Genbank Assembly Accession GCA_000743655.1
Genome Category Isolate
Genome Representation full
Isolate None
Isolation Source soil
Latitude Longitude None
Molecule Count N/A
CDS Count 4,443
Refseq Category na
Seq Rel Date 2014/08/26
Spanned Gaps 406
Species Taxid 1522072
SSU Count 1
Submitter IBBE Istituto di biomembrane e bioenergetica
Taxid 1522072
Total Gap Length 5104
Translation Table 11
tRNA Count (total) 46
Type Material None
Unspanned Gaps 0
Version Status latest
WGS Master JPPQ00000000.1